Publication List

Publications Jürg Ernst Frey

Frey J. E., Frey B., Frei D., Blaser S., Gueuning M., Bühlmann A.
Next generation biosecurity : Towards genome based identification to prevent spread of agronomic pests and pathogens using nanopore sequencing.
PLoS ONE, 17, (7), 2022, 1-13.

Schneeberger P. H. H., Gueuning M., Welsche S., Hürlimann E., Dommann J., Häberli C., Frey J. E., Sayasone S., Keiser J.
Different gut microbial communities correlate with efficacy of albendazole-ivermectin against soil-transmitted helminthiases.
Nature Communications, 13, 2022, 1-12.

Korneyev S. V., Smith J. J., Hulbert D. L., Frey J. E., Korneyev V. A.
A new Species of rhagoletis (Diptera, Tephritidae) from Switzerland, with discussion of its relationships within the genus..
Zoodiversity, 56, (1), 2022, 1-20.

Rueda Mejia M. P., Nägeli L., Lutz S., Ortiz-Merino R. A., Frei D., Frey J. E., Wolfe K. H., Ahrens C., Freimoser F.
Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2).
Data in Brief, 40, (February), 2022, 1-6.

Britt E, Bösch Y, Perren S., Naef A., Frey J. E., Bühlmann A.
The apple fruit microbiome: influence of orchard management, cultivar, storage time and storage atmosphere.
In: Acta Horticulturae - Proceedings V Int. Symp. on Postharvest Pathology: From Consumer to Laboratory. 1325, Publ. ISHS, 2021, 317-324.

Sutter L., Dekumbis V., Ançay A., Mattei G., Frey B., Frey J. E., Blaser S.
First records of Ceroplastes ceriferus (Fabricius) (Hemiptera: Coccidae) and Ceroplastes japonicus (Gray) in Switzerland identified by DNA barcoding.
EPPO / OEPP Bulletin, online, (21 October), 2021, 1-5.

Bösch Y., Britt E., Perren S., Naef A., Frey J. E., Bühlmann A.
Dynamics of the Apple Fruit Microbiome after Harvest and Implications for Fruit Quality.
Microorganisms, 9, (2), 2021, 1-15.

Koutsovoulos G.D., Poullet M., Elashry A., Kozlowski D.K.L., Sallet E., Da Rocha M., Perfus-Barbeoch L., Martin-Jimenez C., Frey J. E., Ahrens C., Kiewnick S., Danchin E.G.J.
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode.
Scientific Data, 7, (1), 2020, 324-337.

Somerville V., Lutz S., Schmid M., Frei D., Moser A., Irmler S., Frey J. E., Ahrens C.
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
BMC Microbiology, 19, (1), 2019, 1-18.

Urresterazu, J, Kägi, C, Bühlmann A., Gassmann J., Santesteban, L.G., Frey J. E., Kellerhals M., Miranda, C
Integration of expert knowledge in the definition of Swiss pear core collection.
Scientific Reports, 9, (8934), 2019, 1-10.

Gueuning M., Ganser D., Blaser S., Albrecht M., Knop E., Praz C., Frey J. E.
Evaluating NGS methods for routine monitoring of wild bees: metabarcoding, mitogenomics or NGS bar-coding.
Molecular Ecology Resources, (2 März), 2019.

Ahrens C., Frey J. E., Irmler S., Kölliker R., Pelludat C., Weisskopf L., Widmer F.
Schlussbericht Agroscope Forschungsprogramm Mikrobielle BioDiversität.
Publ. Agroscope, Bern. Januar, 2018, 50 pp.

Schmid M., Frei D., Patrignani A., Schlapbach R., Frey J. E., Remus-Emsermann M.N.P., Ahrens C.
Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.
Nucleic Acids Research, 46, (17), 2018, 8953-8965.

Bösch Y., Britt E., Perren S., Naef A., Frey J. E., Bühlmann A.
The apple fruit microbiome: influence of orchard management, variety and storage time.
In: Plant Biology Europe. 20 June 2018, Copenhagen. 2018, 1-1.

Ahrens C., Frey J. E., Irmler S., Kölliker R., Pelludat C., Weisskopf L., Widmer F.
Agroscope Research Program Microbial BioDiversity : Final Meeting.
Agroscope Science, 65, 2018, 1-20.

Blaser S., Diem H., von Felten A., Gueuning M., Andreou M., Boonham N., Tomlinson J., Müller P., Utzinger J., Frey J. E., Bühlmann A.
From laboratory to point of entry: development and implementation of a loop-mediated isothermal amplification (LAMP)-based genetic identification system to prevent introduction of quarantine insect species.
Pest Management Science, 74, (6), 2018, 1504-1512.

Schneeberger P.H.H., Coulibaly J.T., Panic G., Daubenberger C., Gueuning M., Frey J. E., Keiser J.
Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome.
Parasites & Vectors, 11, 2018, 168.

Christen V., Schirrmann M., Frey J. E., Fent K.
Global transcriptomic effects of environmentally relevant concentrations of the neonicotinoids clothianidin, imidacloprid and thiamethoxam in honey bees (Apis mellifera).
Environmental Science & Technology, 2018.

Huntscha S., Stravs M.A., Bühlmann A., Ahrens C., Frey J. E., Pomati F., Hollender J., Bürge I., Balmer M., Poiger T.
Seasonal dynamics of glyphosate and AMPA in lake Greifensee: Rapid microbial degradation in the epilimnion during summer.
Environmental Science & Technology, 52, (8), 2018, 4641-4649.

Schmid M., Muri J., Melidis D., Ravikumar Varadarajan A., Somerville V., Wicki A., Moser A., Bourqui M., Wenzel C., Eugster-Meier E., Frey J. E., Irmler S., Ahrens C. H.
Comparative genomics of completely sequenced lactobacillus helveticus genomes provides insights into unique genes and resolves metagenomics data down to the strain level.
Frontiers in Microbiology, 9, 2018, 1-20.

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