Publication List

Publications Christian Ahrens

Valentin J.D.P., Straub H., Pietsch F., Lemare M., Ahrens C., Schreiber F., Webb J.S., van der Mei H.C., Ren Q.
Role of the flagellar hook in the structural development and antibiotic tolerance of Pseudomonas aeruginosa biofilms.
ISME Journal, 16, (4), 2022, 1176-1186.

Ahrens C., Wade J.T., Champion M.M., Langer J.D.
A practical guide to small protein discovery and characterization using mass spectrometry.
Journal of Bacteriology, 204, (1), 2022, e0035321.

Rueda Mejia M. P., Nägeli L., Lutz S., Ortiz-Merino R. A., Frei D., Frey J. E., Wolfe K. H., Ahrens C., Freimoser F.
Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2).
Data in Brief, 40, (February), 2022, 1-6.

Mayerhofer J., Thuerig B., Oberhaensli T., Enderle E., Lutz S., Ahrens C., Fuchs J. G., Widmer F.
Indicative bacterial communities and taxa of disease-suppressing and growth-promoting composts and their associations to the rhizoplane.
FEMS Microbiology Ecology, 97, (10), 2021, 1-15.

Rueda Mejia M. P., Nägeli L., Lutz S., Hayes R.D., Varadarajan A. R., Grigoriev I. V., Ahrens C., Freimoser F.
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes.
Microbial Cell, 8, (8), 2021, 184-202.

Hug S., Liu Y., Heiniger B., Bailly A., Ahrens C., Eberl L., Pessi G.
Differential Expression of Paraburkholderia phymatum Type VI Secretion Systems (T6SS) Suggests a Role of T6SS-b in Early Symbiotic Interaction.
Frontiers in Plant Science, 12, 2021, 1-15.

Fuchs S., Kucklick M., Lehmann E., Beckmann A., Wilkens M., Kolte B., Mustafayeva A., Ludwig T., Diwo M., Wissing J., Jänsch L., Ahrens C., Ignatova Z., Engelmann S.
Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach..
PLoS Genetics, 17, (6), 2021, 1-26.

Petruschke H., Schori C., Canzler S., Riesbeck S., Poehlein A., Daniel R., Frei D., Segessemann T., Zimmermann J., Marinos G., Kaleta C., Jehmlich N., Ahrens C., von Bergen M.
Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome.
Microbiome, 9, 2021, 1-19.

Mayerhofer J., Thürig B., Enderle E., Lutz S., Fuchs J., Ahrens C., Widmer F., Oberhänsli T.
Welche Bakterien machen Komposte suppressiv?
In: Nationale Bioforschungstagung 2020. 04.12., Virtuell (online Konferenz des Nationalen Bioforschungsforum). 2020.

Varadarajan A.R., Allan R.N., Valentin J.D.P., Castaneda Ocampo O.E., Somerville V., Pietsch F., Buhmann M.T., West J., Skipp P.J., van der Mei H.C., Ren Q., Schreiber F., Webb J.S., Ahrens C.
An integrated model system to gain mechanistic insights into biofilm-associated antimicrobial resistance in Pseudomonas aeruginosa MPAO1.
NPJ Biofilms and Microbiomes, 6, (46), 2020, 1-17.

Bartel J., Varadarajan A.R., Sura T., Ahrens C., Maass S., Becher D.
Optimized proteomics workflow for the detection of small proteins.
Journal of Proteome Research, 19, 2020, 4404-4018.

Koutsovoulos G.D., Poullet M., Elashry A., Kozlowski D.K.L., Sallet E., Da Rocha M., Perfus-Barbeoch L., Martin-Jimenez C., Frey J. E., Ahrens C., Kiewnick S., Danchin E.G.J.
Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode.
Scientific Data, 7, (1), 2020, 324-337.

Reva O.N., Larisa S.A., Mwakili A.D., Tibuhwa, D., Lyantagaye S., Chan. W.Y., Lutz S., Ahrens C., Vater J., Borriss R.
Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains.
Applied Microbiology and Biotechnology, 104, (17), 2020, 7643-7656.

Melior H., Maass S., Li S., Förstner K.U., Azarderakhsh S., Varadarajan A.R., Stötzel M., Elhossary M., Barth-Weber S., Ahrens C., Becher D., Evguenieva-Hackenberg E.
The leader peptide peTrpL forms antibiotic-containing ribonucleoprotein complexes for posttranscriptional regulation of multiresistance genes.
mBio, 11, (3), 2020, 1-22.

De Vrieze M., Varadarajan A. R., Schneeberger K., Bailly A., Rohr R. P., Ahrens C., Weisskopf L.
Linking comparative genomics of nine potato-associated pseudomonas isolates with their differing biocontrol potential against late blight.
Frontiers in Microbiology, 11, (30. April), 2020, 1-20.

Varadarajan A. R., Goetze S., Pavlou M. P., Grosboillot V., Shen Y., Loessner M. J., Ahrens C., Wollscheid B.
A Proteogenomic Resource Enabling Integrated Analysis of Listeria Genotype-Proteotype-Phenotype Relationships..
Journal of Proteome Research, 19, (4), 2020, 1647-1662.

Reva O.N., Swanevelder D.Z.H., Mwita L.A., Mwakili A.D., Muzondiwa D., Joubert M., Chan W.Y., Lutz S., Ahrens C., Avdeeva L.V., Kharkota M.A., Tibuhwa D., Lyantagaye S., Vater J., Borriss R. and others
Genetic, epigenetic and phenotypic diversity of four bacillus velezensis strains used for plant protection or as probiotics.
Frontiers in Microbiology, 10, (2619), 2019, 1-25.

Valentin J., Ravikumar Varadarajan A., Ahrens C., van der Mei H., Ren Q.
Identification of genes involved in Pseudomonas aeruginosa biofilm resistance to antibiotics.
In: eCM Konferenz Orthopedic Infection. 26.06., Davos. 2019.

Somerville V., Lutz S., Schmid M., Frei D., Moser A., Irmler S., Frey J. E., Ahrens C.
Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
BMC Microbiology, 19, (1), 2019, 1-18.

Fernández N., Cabrera J. J., Varadarajan A. R, Lutz S., Ledermann R., Roschitzki B., Eberl L., Bedmar E. J., Fischer H.-M., Pessi G., Ahrens C. H., Mesa S.
An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens.
Frontiers in Microbiology, 10, (May), 2019, 1-22.

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